{"id":39048,"date":"2015-02-26T14:27:38","date_gmt":"2015-02-26T14:27:38","guid":{"rendered":"https:\/\/\u200bnew.iter.es\/iongap\/"},"modified":"2025-02-26T14:27:38","modified_gmt":"2025-02-26T14:27:38","slug":"iongap","status":"publish","type":"post","link":"https:\/\/www.iter.es\/en\/iongap\/","title":{"rendered":"IonGAP"},"content":{"rendered":"

IonGap is a pipeline designed for the assembly and subsequent analysis of bacterial genomic sequence data. Both its components and its configuration are based on a research process aimed at discovering the optimal combination of tools to obtain good results from “single-end<\/strong>” reads generated by the Ion Torrent PGM<\/strong> sequencer. <\/p>\n

\"\"<\/p>\n

Ion Torrent technology allows genomic sequencing at reduced costs, which leads to a wide use in bacterial genomics. Given the large amount of information produced by this platform, simpler and more intuitive bioinformatics tools that require minimal learning are required in order to transfer this tool to an applied clinical environment. <\/p>\n

IonGap was born from a research project at the University of La Laguna, where it was initially conceived as a tool for the genomics experts of the University Institute of Tropical Diseases and Public Health of the Canary Islands. Currently, it has become a joint project between the Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables, the University of La Laguna and the Canary Health Service, whose headquarters are located in Tenerife, and runs on the TeideHPC supercomputer. <\/p>\n

IonGAP is in the public domain, runs on the TeideHPC supercomputer and is being used by a large number of professionals from multiple countries and institutions.<\/p>\n

Links of interest:<\/strong><\/p>\n

IONGAP<\/a><\/p>\n

INSTALATION – Teide HPC<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

IonGap is a pipeline designed for the assembly and subsequent analysis of bacterial genomic sequence data. Both its components and its configuration are based on a research process aimed at discovering the optimal combination of tools to obtain good results from “single-end” reads generated by the Ion Torrent PGM sequencer. Ion Torrent technology allows genomic<\/p>\n","protected":false},"author":1,"featured_media":35749,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[210,218],"tags":[],"class_list":["post-39048","post","type-post","status-publish","format-standard","has-post-thumbnail","category-activities","category-products"],"yoast_head":"\nIonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables<\/title>\n<meta name=\"description\" content=\"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.iter.es\/en\/iongap\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"IonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\" \/>\n<meta property=\"og:description\" content=\"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.iter.es\/en\/iongap\/\" \/>\n<meta property=\"og:site_name\" content=\"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ITER.tenerife\/\" \/>\n<meta property=\"article:published_time\" content=\"2015-02-26T14:27:38+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2025-02-26T14:27:38+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"1100\" \/>\n\t<meta property=\"og:image:height\" content=\"550\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"admin\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@itertenerife\" \/>\n<meta name=\"twitter:site\" content=\"@itertenerife\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"admin\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#article\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/\"},\"author\":{\"name\":\"admin\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/#\\\/schema\\\/person\\\/b7578ef274a0591eca9fe8576029c87b\"},\"headline\":\"IonGAP\",\"datePublished\":\"2015-02-26T14:27:38+00:00\",\"dateModified\":\"2025-02-26T14:27:38+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/\"},\"wordCount\":214,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/#organization\"},\"image\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/02\\\/IonGAp_ADN_15.jpg\",\"articleSection\":[\"Activities\",\"Products\"],\"inLanguage\":\"en-US\"},{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/\",\"url\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/\",\"name\":\"IonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#primaryimage\"},\"image\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/02\\\/IonGAp_ADN_15.jpg\",\"datePublished\":\"2015-02-26T14:27:38+00:00\",\"dateModified\":\"2025-02-26T14:27:38+00:00\",\"description\":\"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#primaryimage\",\"url\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/02\\\/IonGAp_ADN_15.jpg\",\"contentUrl\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/02\\\/IonGAp_ADN_15.jpg\",\"width\":1100,\"height\":550},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/en\\\/iongap\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Portada\",\"item\":\"https:\\\/\\\/www.iter.es\\\/en\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"IonGAP\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/#website\",\"url\":\"https:\\\/\\\/www.iter.es\\\/\",\"name\":\"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/www.iter.es\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/#organization\",\"name\":\"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\",\"url\":\"https:\\\/\\\/www.iter.es\\\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/#\\\/schema\\\/logo\\\/image\\\/\",\"url\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/11\\\/Logo-aniversario-scaled.png\",\"contentUrl\":\"https:\\\/\\\/www.iter.es\\\/wp-content\\\/uploads\\\/2025\\\/11\\\/Logo-aniversario-scaled.png\",\"width\":2560,\"height\":589,\"caption\":\"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables\"},\"image\":{\"@id\":\"https:\\\/\\\/www.iter.es\\\/#\\\/schema\\\/logo\\\/image\\\/\"},\"sameAs\":[\"https:\\\/\\\/www.facebook.com\\\/ITER.tenerife\\\/\",\"https:\\\/\\\/x.com\\\/itertenerife\",\"https:\\\/\\\/www.instagram.com\\\/itertenerife\\\/\",\"https:\\\/\\\/www.youtube.com\\\/user\\\/IterTenerife\"]},{\"@type\":\"Person\",\"@id\":\"https:\\\/\\\/www.iter.es\\\/#\\\/schema\\\/person\\\/b7578ef274a0591eca9fe8576029c87b\",\"name\":\"admin\",\"image\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g\",\"url\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g\",\"contentUrl\":\"https:\\\/\\\/secure.gravatar.com\\\/avatar\\\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g\",\"caption\":\"admin\"},\"sameAs\":[\"https:\\\/\\\/\u200bwww.iter.es\"],\"url\":\"https:\\\/\\\/www.iter.es\\\/en\\\/author\\\/pyt_vx27fp24\\\/\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"IonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","description":"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/www.iter.es\/en\/iongap\/","og_locale":"en_US","og_type":"article","og_title":"IonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","og_description":"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.","og_url":"https:\/\/www.iter.es\/en\/iongap\/","og_site_name":"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","article_publisher":"https:\/\/www.facebook.com\/ITER.tenerife\/","article_published_time":"2015-02-26T14:27:38+00:00","article_modified_time":"2025-02-26T14:27:38+00:00","og_image":[{"width":1100,"height":550,"url":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg","type":"image\/jpeg"}],"author":"admin","twitter_card":"summary_large_image","twitter_creator":"@itertenerife","twitter_site":"@itertenerife","twitter_misc":{"Written by":"admin","Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"Article","@id":"https:\/\/www.iter.es\/en\/iongap\/#article","isPartOf":{"@id":"https:\/\/www.iter.es\/en\/iongap\/"},"author":{"name":"admin","@id":"https:\/\/www.iter.es\/#\/schema\/person\/b7578ef274a0591eca9fe8576029c87b"},"headline":"IonGAP","datePublished":"2015-02-26T14:27:38+00:00","dateModified":"2025-02-26T14:27:38+00:00","mainEntityOfPage":{"@id":"https:\/\/www.iter.es\/en\/iongap\/"},"wordCount":214,"commentCount":0,"publisher":{"@id":"https:\/\/www.iter.es\/#organization"},"image":{"@id":"https:\/\/www.iter.es\/en\/iongap\/#primaryimage"},"thumbnailUrl":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg","articleSection":["Activities","Products"],"inLanguage":"en-US"},{"@type":"WebPage","@id":"https:\/\/www.iter.es\/en\/iongap\/","url":"https:\/\/www.iter.es\/en\/iongap\/","name":"IonGAP - ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","isPartOf":{"@id":"https:\/\/www.iter.es\/#website"},"primaryImageOfPage":{"@id":"https:\/\/www.iter.es\/en\/iongap\/#primaryimage"},"image":{"@id":"https:\/\/www.iter.es\/en\/iongap\/#primaryimage"},"thumbnailUrl":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg","datePublished":"2015-02-26T14:27:38+00:00","dateModified":"2025-02-26T14:27:38+00:00","description":"Descubre las \u00faltimas noticias, proyectos e iniciativas del ITER en energ\u00edas renovables, innovaci\u00f3n tecnol\u00f3gica, sostenibilidad e investigaci\u00f3n en Tenerife.","breadcrumb":{"@id":"https:\/\/www.iter.es\/en\/iongap\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/www.iter.es\/en\/iongap\/"]}]},{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.iter.es\/en\/iongap\/#primaryimage","url":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg","contentUrl":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/02\/IonGAp_ADN_15.jpg","width":1100,"height":550},{"@type":"BreadcrumbList","@id":"https:\/\/www.iter.es\/en\/iongap\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Portada","item":"https:\/\/www.iter.es\/en\/"},{"@type":"ListItem","position":2,"name":"IonGAP"}]},{"@type":"WebSite","@id":"https:\/\/www.iter.es\/#website","url":"https:\/\/www.iter.es\/","name":"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","description":"","publisher":{"@id":"https:\/\/www.iter.es\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/www.iter.es\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/www.iter.es\/#organization","name":"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables","url":"https:\/\/www.iter.es\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/www.iter.es\/#\/schema\/logo\/image\/","url":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/11\/Logo-aniversario-scaled.png","contentUrl":"https:\/\/www.iter.es\/wp-content\/uploads\/2025\/11\/Logo-aniversario-scaled.png","width":2560,"height":589,"caption":"ITER - Instituto Tecnol\u00f3gico y de Energ\u00edas Renovables"},"image":{"@id":"https:\/\/www.iter.es\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/www.facebook.com\/ITER.tenerife\/","https:\/\/x.com\/itertenerife","https:\/\/www.instagram.com\/itertenerife\/","https:\/\/www.youtube.com\/user\/IterTenerife"]},{"@type":"Person","@id":"https:\/\/www.iter.es\/#\/schema\/person\/b7578ef274a0591eca9fe8576029c87b","name":"admin","image":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/secure.gravatar.com\/avatar\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g","url":"https:\/\/secure.gravatar.com\/avatar\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g","contentUrl":"https:\/\/secure.gravatar.com\/avatar\/1200bd0ecce7460dcff59b0bdd02fe231a631d91e4a4c3739c1745789d50cb9c?s=96&d=mm&r=g","caption":"admin"},"sameAs":["https:\/\/\u200bwww.iter.es"],"url":"https:\/\/www.iter.es\/en\/author\/pyt_vx27fp24\/"}]}},"_links":{"self":[{"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/posts\/39048","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/comments?post=39048"}],"version-history":[{"count":0,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/posts\/39048\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/media\/35749"}],"wp:attachment":[{"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/media?parent=39048"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/categories?post=39048"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.iter.es\/en\/wp-json\/wp\/v2\/tags?post=39048"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}